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Integration test example 8/30/2025, 5:04:34 AM

volvox

ctgA

10,000

20,000

30,000

40,000

50,000

52bp

100

110

120

130

140

150

160

ctgA

No tracks active.

Tracks

Reference sequence (volvox)

GCContent

MultiWig

Variants

volvox structural variant test (HTML italic+link)

volvox structural variant test w/renamed refs

volvox 1000genomes vcf

volvox filtered vcf

volvox filtered vcf (with assembly alias)

volvox filtered vcf (green snp, purple indel)

volvox inversions

Ensembl VEP example

Jannovar example

BEDPE arcs

Integration test

volvox-sorted.cram (contigA, default display)

volvox-sorted.cram (contigA, LinearPileupDisplay, large height, colorBy mappingQual)

volvox-sorted.cram (contigA, LinearSNPCoverageDisplay)

volvox-sorted.cram (ctgA, default display)

volvox-sorted.cram (ctgA, LinearPileupDisplay)

volvox-sorted.cram (ctgA, LinearSNPCoverageDisplay)

volvox-sorted.bam (ctgA, larger default height, colorBy mappingQual)

volvox-sorted.bam (contigA LinearSNPCoverageDisplay)

volvox-sorted.bam (contigA LinearPileupDisplay)

volvox-sorted.bam (ctgA, canvas)

volvox-sorted.bam (contigA)

volvox-sorted.bam (small max height)